.. granite documentation master file, created by
   sphinx-quickstart on Thu Aug  6 10:40:44 2020.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

granite
===================================

granite is a software suite for working with genomic variants. The suite provides inheritance mode callers and utilities to filter and refine variants called by other methods in VCF format.

.. image:: images/chart.png

Contents:

.. toctree::
   :hidden:

   self

.. toctree::
   :maxdepth: 2

   install
   fileformats
   callers
   filters
   quality
   utilities
   API