Install

A ready-to-use docker image is available to download.

docker pull b3rse/granite:<version>

To run locally, Python 3.6+ is required together with the following libraries:

• numpy
• pysam
• bitarray
• pytabix
• h5py
• matplotlib

Additional software needs to be available in the environment:

• samtools
• bgzip
• tabix

To install the program from source:

git clone https://github.com/dbmi-bgm/granite
cd granite
make configure && make build

To install the program with pip:

pip install granite-suite